We have almost 200 lists of words from topics as varied as types of butterflies, jackets, currencies, vegetables and knots! 1A cardboard or plastic disk printed with a design or picture, collected or swapped by children or used in games. This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. 1990s from POG (acronym from the initial letters of passion fruit, orange, guava), a trademark for a juice drink originally made by a dairy on Maui, Hawaii: the lids of the drink provided the first game disks. Search for other works by this author on: The ASRG database: identification and survey of, Unexpected complexity of Poly(A)-binding protein gene families in flowering plants: three conserved lineages that are at least 200 million years old and possible auto- and cross-regulation, Genome analysis: RNA recognition motif (RRM) and K homology (KH) domain RNA-binding proteins from the flowering plant, A family of RRM-type RNA-binding proteins specific to plant mitochondria, Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis, The CRM domain: an RNA binding module derived from an ancient ribosome-associated protein, Gapped BLAST and PSI-BLAST: a new generation of protein database search programs, A general method applicable to the search for similarities in the amino acid sequence of two proteins, EMBOSS: the European Molecular Biology Open Software Suite, MUSCLE: a multiple sequence alignment method with reduced time and space complexity, Predotar: a tool for rapidly screening proteomes for N-terminal targeting sequences, Prediction of organellar targeting signals, Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure, The Bioperl toolkit: Perl modules for the life sciences, MView: a web-compatible database search or multiple alignment viewer, OrthologID: automation of genome-scale ortholog identification within a parsimony framework, Genome cluster database. I just got my paycheck for the month. The database can be queried using any combination of gene name, accession, domain, and predicted intracellular location, or using BLAST. For full access to this pdf, sign in to an existing account, or purchase an annual subscription. Slang squad! A phylogenetic tree of rice and Arabidopsis proteins related to POG members (see criteria for ‘related’ proteins above) is displayed beneath the domain maps. On this year […], Ay-up, ladies and gents: it’s time for a British Slang roll-call! Your comment will be reviewed and published at the journal's discretion. POGs/PlantRBP is distinct from these and other available resources in its use of both mutual-best-hit and phylogenetic analysis to assign orthologous groups, in the types of data that are displayed concurrently for orthologous proteins (domain organization, targeting predictions, literature citations, phylogenetic trees, links to putative maize orthologs), and in the types of searches that are easily accomplished (e.g. Thank you for submitting a comment on this article. Annotation efforts will focus on predicted RNA binding proteins (RBPs): i.e. Definition: Person Other than Grunt. How to use the term Pog: When they beat that boss with only 1 health left, there were pogs in the chat. Subcellular compartmentalization leads to distinctive proteome properties. This set of algorithms provides two independent predictions for targeting to each of the chloroplast (TargetP and Predotar), mitochondrion (TargetP and Predotar), nucleus (PredictNLS and NucPred) and secretory system (TargetP and Predotar). Users who take this step will be encouraged to share their results through the community annotation interface. This display highlights inconsistent gene models and inconsistent domain predictions among orthologs. If you know of another definition of Pog that should be included here, please let us know. A children's game in which players strike a pile of Pogs with an implement, winning any that land face upwards when they fall. searches for orthologous groups containing proteins with both a specified domain content and predicted intracellular location). Maize genomic and cDNA sequences are associated with the POG containing the rice gene with which they are most similar. We hope you have found this useful. The POG View page (Figure 1) summarizes information about members of each POG in a format that facilitates comparative analyses. Here Are Our Top English Tips, The Best Articles To Improve Your English Language Usage, The Most Common English Language Questions. POG is a term, usually derogatory in nature, to describe a non-combative soldier in any of the military branches. Useful features of the database include the ability to search for proteins with both a specified domain content and intracellular location, the concurrent display of mutual best hits and phylogenetic trees which facilitates evaluation of POG assignments, the association of maize sequences with POGs, and the display of targeting predictions and domain organization for all POG members, which reveals consistency, or lack thereof, of those predictions. Each POG display page includes a graphical representation of the domain organization of POG members, the results of two targeting predictors for each of the nucleus, chloroplast, mitochondrion, and secretory system, and a phylogenetic tree from which users can navigate to related POGs. You could not be signed in, please check and try again. The POG view page. For example, typing ‘At*’ in the Gene field will limit the search to Arabidopsis proteins. Proteomic analysis of SUMO1-SUMOylome changes during defense elicitation in Arabidopsis. Public users are able to search the site and view the abstracts and keywords for each book and chapter without a subscription. Please subscribe or login to access full text content. Download our English Dictionary apps - available for both iOS and Android. For example, entering ‘RRM PPR’ under domain, and ‘chloroplast’ under targeting prediction returns POGs containing proteins with both an RRM and PPR domain that are predicted by either Predotar or TargetP to be targeted to chloroplasts. They are considered a tool for visual merchandising. Searches can be further limited to return proteins predicted by two different algorithms to be targeted to either the chloroplast, mitochondrion, nucleus, or secretory system. According to the Oxford Dictionary, "It is a diagram or model that indicates the placement of retail products on shelves in order to maximize sales." BLASTn was chosen for this purpose because nucleotide similarity provides greater resolution than amino acid similarity for species as closely-related as maize and rice. The BLAST results are parsed and displayed using Bioperl (17). A sequence family analysis platform for Arabidopsis and rice, AMPDB: the Arabidopsis Mitochondrial Protein Database, Analysis of curated and predicted plastid subproteomes of Arabidopsis. Thus, there is a need for resources that predict orthologous groups and bring together information about the orthologs in a manner that simplifies comparative analyses. POGs/PlantRBP (Author Webpage) is a relational database that integrates data from rice, Arabidopsis, and maize by placing the complete Arabidopsis and rice proteomes and available maize sequences into ‘putative orthologous groups’ (POGs). Rice sequences (version 4) were downloaded from TIGR (Author Webpage). Genes in GCD are linked to protein alignments and expression profiling data. None declared. Here we go! Sequences incorporated into PlantRBP were derived from the following sources. Used as a response to a "close call" in a video game; often employed on streaming sites. the PPR (5) and CRM (6) families]. Rice loci in each POG are linked to a graphical representation of putative maize orthologs. All Rights Reserved. Searches can be performed for proteins predicted by either one or both of the ‘redundant’ algorithms to localize to a specific compartment. A children's game in which players strike a pile of Pogs with an implement, winning any that land face upwards when they fall. Maize genomic assemblies (MAGI's at Author Webpage), EST assemblies (PlantGDB PUTs at Author Webpage), and ESTs from the maize full-length cDNA project (Author Webpage) are displayed below the TIGR gene model for their best rice hit in BLASTn searches against TIGR's rice pseudochromosomes, version 4. mitochondria (21) and plastids (22)] and to smaller databases that focus on RBP subsets [e.g. A shortening of the contraction PogChamp, which stands for Pog Champion. These two groups are usually at odds. 1990s from POG (acronym from the initial letters of passion fruit, orange, guava), a trademark for a juice drink originally made by a dairy on Maui, Hawaii: the lids of the drink provided the first game disks.
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